Find the best boat tours in Japan on Pelago. Plan and book online with the best prices and world class support.

The Best Boat tours in Japan | Updated December 2025

Japan

Experience the beauty of Okinawa's underwater life aboard the Orca. Observe colorful fish and coral reefs through the glass bottom while enjoying a smooth dry cruise in paradise.

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Enjoy a 20-minute river cruise through Osaka’s lively Dotonbori district with fun commentary and scenic waterfront views.

Glide along the Dotonbori River soaking in the dazzling neon lights and lively surrounding shops all while enjoying a delightful mini cruise that showcases the charm of Osaka Minami.

Feel the breeze in your hair on this open-top boat ride as you cruise along the glittering Dōtonbori River at night, passing iconic landmarks like the Glico Running Man, which has illuminated the canal district for over 80 years.

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Experience cherry blossoms framing the nostalgic train journey through Arashiyama a perfect blend of nature and travel showcasing the stunning scenery of Japan's seasonal beauty.

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Experience the stunning natural beauty of Hozu Valley while drifting down the serene river surrounded by majestic mountains and lush greenery perfect for every season.

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See Okinawa’s tropical fish and coral reefs on a smooth 60-minute glass-bottom cruise from Naha—easy check-in, family-friendly, and fun for all ages.

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Glide through the heart of Osaka along the Dotonbori where dazzling neon lights and lively scenery create a unique perspective of this iconic waterway revealing hidden gems along the journey.

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Breathtaking views of Amanohashidate and Ine Bay await framed by cherry blossoms. Explore the floating fisherman’s village and savor a delicious meal while soaking in the serene landscape.

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Experience the serene ride on the Captain Line connecting Osaka Aquarium and Universal Studios Japan while enjoying panoramic views of the Osaka waterfront from the open deck.

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Experience a unique perspective of Tokyo as you glide past iconic landmarks like the Rainbow Bridge and Tokyo Skytree all while enjoying a leisurely water bus ride.

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Experience the stunning Uratomi Kaigan with its crystal-clear waters and dramatic rock formations perfect for exploring the beauty of Japan's San'in Coast. Endless opportunities for adventure await.

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Experience the beauty of autumn foliage as the Sagano Romantic Train winds through colorful landscapes offering stunning views and a unique journey through Kyoto's natural wonders.

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The Best Boat tours in
Japan

Okinawa, Japan｜Naha Large Underwater Sightseeing Boat Orca Ticket

Osaka Minami Dotonbori Tombori River Cruise Ticket Reservation

Kyoto Hozugawa River Boat Ride, Sagano Romantic Train, Arashiyama Bamboo Grove Stroll | Depart from Kyoto Station | Japan

Hozugawa River Boat Ride Experience in Arashiyama, Kyoto

Glass Bottom Boat Tour Okinawa

Osaka Dotonbori Wonder Cruise

Kyushu Yanagawa River Cruise｜Japan

Osaka Day Tour: Amanohashidate & Ine Bay

Osaka Aquarium-Universal Studios Japan Captain Line

Gunkanjima island Cruise Experience | Nagasaki, Japan

Abashiri Drift Ice Sightseeing ＆ Icebreaker Ship "Aurora"

Visit Gunkanjima Island (Battleship Island) in Nagasaki

Tokyo, Japan｜Ryogoku/Asakusa - Odaiba Tokyo Mizube Line Water Bus

Uratomi Coast Cruise, Tottori Sand Dunes, Sand Museum Tour

Amakusa Dolphin Viewing Sea Cruise Ticket | Kumamoto

Okinawa, Japan Island Hopping Day Tour｜Iriomote Island & Yubu Island｜Depart from Ishigaki Island

Kyoto Sagano Romantic Train in Arashiyama Bus Tour

NEW Icebreakers GARINKO GO Ⅲ CRUISE and SOUNKYO ICE FALL FESTIVAL

Asakusa-Odaiba Water Bus Cruise by Tokyo Mizube Line

Hiroshima・Seto Inland Sea｜SEA SPICA Seto Inland Sea Island Hopping Tour