Find the best nature & wildlife tours in Japan on Pelago. Plan and book online with the best prices and world class support.

The Best Nature & Wildlife tours in Japan | Updated February 2026

Japan

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Experience the majesty of humpback whales breaching in Okinawa's clear waters where breathtaking marine encounters create unforgettable memories against a stunning backdrop of nature.

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Experience the stunning views of Mt. Fuji alongside the striking architecture of traditional pagodas perfect for creating unforgettable memories in Japan's iconic landscapes. Customize your journey for a personal touch.

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Experience the stunning majesty of Mt. Fuji while cruising on the pirate ship at Ashinoko Lake surrounded by lush greenery and breathtaking views. Perfect for adventurers and shoppers alike!

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Enjoy a self-guided full-day journey through Hakone with included train tickets and a Hakone Free Pass.

Experience stunning fall foliage as you glide above the landscape on the Hakone Ropeway immersing yourself in the beauty of nature and the allure of Japan's scenic wonders.

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Experience the serene beauty of Matsushima Bay where unique islands and historic temples invite exploration. Enjoy the scenic ferry ride and indulge in local delicacies at your own pace.

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Experience the stunning winter views from Mt. Gozaisho Ropeway where pristine snow-capped peaks meet breathtaking scenery creating unforgettable memories for every traveler. Enjoy the adventure!

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Experience the stunning stretch of Amanohashidate where lush hills meet serene waters revealing Japan's timeless beauty and peaceful coastal charm perfect for nature lovers and explorers alike.

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The Best Nature & Wildlife tours in
Japan

Departing from Takayama [Regular sightseeing bus] World Heritage Sites Shirakawago and Gokayama Ainokura

Japan・Okinawa｜Kerama Islands Whale Watching｜Chinese and English support from Naha (free city pick-up)｜Japanese support from Chatan

Private Mount Fuji And Hakone Tour with English Guide

Asahiyama Zoo, Fascinating Aoi-Ike Light Up in Winter!

Mt. Fuji 5th Station, Owakudani Ropeway, Pirate Ship plus Outlet shopping!

[Biei/Furano] One-day sightseeing by private car!

(Spring Only) 1-Day Snow Walls of Tateyama-Kurobe Alpine Route Tour

Hokkaido's Winter Awe-inspiring Drift Ice & Sounkyo Ice Sculpture!

From Takayama: Alpine Splendor - Shinhotaka Ropeway and Kamikochi

Explore Mt. Fuji Ice Cave in Aokigahara Forest

From Tokyo to Hakone: Train Tickets and Hakone Free Pass

Iriomote Island Night Jungle & Starry Sky Tour with Hotel Pick-Up | Uehara Area

Tokyo: Mt.Fuji & Lake Kawaguchiko 1-Day Bus Tour w/Optional Lunch

From Tokyo to Nikko: Limited Express Tickets with Souvenir

Day Trip to Sendai Matsushima (Shinkansen Tickets & Boat Ticket)

Togakushi: A Serene Walk Through Sacred Forests & Soba Traditions

Mt. Gozaisho Ropeway,Nabana no Sato for Illumination and Begonia Garden!

Amanohashidate and Miyama Kayabuki no Sato 1 Day Tour from Osaka

Shimanami Kaido 1 Day Cycling Tour from Onomichi to Imabari

Mt.Fuji Chartered Taxi Tour