Find the best nature & wildlife tours in Japan on Pelago. Plan and book online with the best prices and world class support.

The Best Nature & Wildlife tours in Japan | Updated December 2025

Japan

Explore Kyoto’s top sights—Fushimi Inari, Arashiyama Bamboo Grove, and the Sagano Romantic Train—on a hassle-free day trip from Osaka.

Traverse through a tunnel of blooming cherry blossoms on a scenic railway soaking in the serene beauty of nature while enjoying a day filled with rich Japanese culture and history.

sagano-romantic-train-arashiyama-kiyomizudera-fushimi-inari-taisha-day-tour_1

asahiyama-zoo-fascinating-aoi-ike-light-up-in-winter_1

okinawa-whale-watching-from-naha_1

Experience the unique sight of Japanese macaques soaking in natural hot springs surrounded by serene winter landscapes offering a delightful glimpse into their playful behavior and habitat.

snow-monkey-shiga-kogen-roman-museum-with-lunch-buffet_1

Experience the majesty of humpback whales breaching in Okinawa's clear waters where breathtaking marine encounters create unforgettable memories against a stunning backdrop of nature.

kerama-island-whale-watching-half-day-tour-from-naha-chatan-in-okinawa-japan_1

Experience breathtaking views of humpback whales breaching as you cruise the azure waters of Okinawa capturing unforgettable memories with friends or family during this exclusive winter tour.

winter-only-kerama-islands-whale-watching-tour-from-naha-in-okinawa-with-round-trip-transfers-photos-japan_1

Breathtaking views of Amanohashidate and Ine Bay await framed by cherry blossoms. Explore the floating fisherman’s village and savor a delicious meal while soaking in the serene landscape.

hidden-gems-amanohashidate-ine-bay-cruise-experience-from-osaka_1

Experience the stunning views of Mt. Fuji alongside the striking architecture of traditional pagodas perfect for creating unforgettable memories in Japan's iconic landscapes. Customize your journey for a personal touch.

private-mount-fuji-and-hakone-tour-with-english-guide_1

regular-sightseeing-bus-world-heritage-shirakawa-go-and-gokayama-ainokura_1

explore-mt-fuji-ice-cave-in-aokigahara-forest_1

snow-view-rafting-with-watching-wildlife-in-chitose-river_1

Experience the stunning majesty of Mt. Fuji while cruising on the pirate ship at Ashinoko Lake surrounded by lush greenery and breathtaking views. Perfect for adventurers and shoppers alike!

mt-fuji-5th-station-owakudani-ropeway-pirate-ship-plus-outlet-shopping_1

Experience the majestic silhouette of Mt. Fuji framed by traditional architecture blending history and stunning views. A perfect slice of Japan awaits explorers ready for adventure.

multi-day-bilingual-driver-for-your-trip-anywhere-in-japan_1

togakushi-shrine-hiking-trails-tour-in-nagano_1

biei-furano-one-day-sightseeing-by-private-car_1

Experience the stunning winter views from Mt. Gozaisho Ropeway where pristine snow-capped peaks meet breathtaking scenery creating unforgettable memories for every traveler. Enjoy the adventure!

mt-gozaisho-ropeway-nabana-no-sato-for-illumination-and-begonia-garden_1

private-tour-to-mt-fuji-lake-kawaguchi-with-limousine-and-driver_1

okinawa-japan-whale-watching-experience-in-winter-departure-from-chatan-american-village-go-by-yourself_1

scenic-spots-of-mt-fuji-and-lake-kawaguchi-1-day-bus-tour_1

morning-or-afternoon-departure-lealea-original-southern-sightseeing-bus-tour-world-heritage-site-sefa-utaki-ryukyu-glass-village-valley-of-gangala-or-okinawa-world-senagajima-umikaji-terrace-naha-departure-japan_1

Get 10% off on the app with promo code APP10

The Best Nature & Wildlife tours in
Japan

Kyoto Tour: Sagano Train, Bamboo Grove & Fushimi Inari

Asahiyama Zoo, Fascinating Aoi-Ike Light Up in Winter!

Okinawa Whale Watching From Naha

Day Trip to See the Snow Monkeys from Shinjuku with Lunch Buffet

Japan・Okinawa｜Kerama Islands Whale Watching｜Chinese and English support from Naha (free city pick-up)｜Japanese support from Chatan

[Winter Only] Kerama Islands Whale Watching Tour from Naha in Okinawa with Round-Trip Transfers & Photos | Japan

Osaka Day Tour: Amanohashidate & Ine Bay

Private Mount Fuji And Hakone Tour with English Guide

Departing from Takayama [Regular sightseeing bus] World Heritage Sites Shirakawago and Gokayama Ainokura

Explore Mt. Fuji Ice Cave in Aokigahara Forest

Snow View Rafting with Watching Wildlife in Chitose River

Mt. Fuji 5th Station, Owakudani Ropeway, Pirate Ship plus Outlet shopping!

Mt Fuji, Takayama, Nagano Private Tour w Local guide/photographer

Togakushi: A Serene Walk Through Sacred Forests & Soba Traditions

[Biei/Furano] One-day sightseeing by private car!

Mt. Gozaisho Ropeway,Nabana no Sato for Illumination and Begonia Garden!

Private Tour to Mt Fuji, Lake Kawaguchi with Limousine and Driver

Okinawa, Japan｜Winter Whale Watching Experience｜Departure from Chatan American Village (Go on your own)

Tokyo: Mt.Fuji & Lake Kawaguchiko 1-Day Bus Tour w/Optional Lunch

[Morning or Afternoon Departure] LeaLea Southern Okinawa Bus Tour - Sefa Utaki, Himeyuri Tower, Ryukyu Glass Village, & Valley of Gangara or Okinawa World | Departing from Naha