Find the best nature & wildlife tours in Japan on Pelago. Plan and book online with the best prices and world class support.

The Best Nature & Wildlife tours in Japan | Updated February 2026

Japan

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Experience the majesty of humpback whales breaching in Okinawa's clear waters where breathtaking marine encounters create unforgettable memories against a stunning backdrop of nature.

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Experience the stunning views of Mt. Fuji alongside the striking architecture of traditional pagodas perfect for creating unforgettable memories in Japan's iconic landscapes. Customize your journey for a personal touch.

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Experience the stunning majesty of Mt. Fuji while cruising on the pirate ship at Ashinoko Lake surrounded by lush greenery and breathtaking views. Perfect for adventurers and shoppers alike!

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Experience the majestic silhouette of Mt. Fuji framed by traditional architecture blending history and stunning views. A perfect slice of Japan awaits explorers ready for adventure.

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Enjoy a self-guided full-day journey through Hakone with included train tickets and a Hakone Free Pass.

Experience stunning fall foliage as you glide above the landscape on the Hakone Ropeway immersing yourself in the beauty of nature and the allure of Japan's scenic wonders.

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Explore the beauty of cherry blossoms framing the historic architecture of the Imperial Palace. Experience Japan's vibrant culture and rich history in this serene garden setting.

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Experience breathtaking views of humpback whales breaching as you cruise the azure waters of Okinawa capturing unforgettable memories with friends or family during this exclusive winter tour.

Get 10% off on the app with promo code APP10

The Best Nature & Wildlife tours in
Japan

Departing from Takayama [Regular sightseeing bus] World Heritage Sites Shirakawago and Gokayama Ainokura

Japan・Okinawa｜Kerama Islands Whale Watching｜Chinese and English support from Naha (free city pick-up)｜Japanese support from Chatan

Private Mount Fuji And Hakone Tour with English Guide

Mt. Fuji 5th Station, Owakudani Ropeway, Pirate Ship plus Outlet shopping!

[Biei/Furano] One-day sightseeing by private car!

Mt Fuji, Takayama, Nagano Private Tour w Local guide/photographer

Okinawa Whale Watching From Naha

From Tokyo to Hakone: Train Tickets and Hakone Free Pass

1-Day Winter Tour From Nozawa Onsen: Snow Monkeys, Zenko-ji Temple & Sake

Shimanami Kaido 1 Day Cycling Tour from Onomichi to Imabari

Okinawa Iriomotejima Night Adventure Tour

Horse Riding

Tokyo, Edo Castle & East Garden of the Imperial Palace Tour

Okinawa: From Naha: 1 day Kerama Islands diving license required

Uji: Private immersion into Kyoto's tea and reglious culture

Okinawa Miyako Star Gazing & Subtropical Jungle Night Tour

Iya Valley BROMPTON Slow Cycling Tour

eTour de Matsumoto - Electric Bike Tour

Asahiyama Zoo, Fascinating Aoi-Ike Light Up in Winter!

[Winter Only] Kerama Islands Whale Watching Tour from Naha in Okinawa with Round-Trip Transfers & Photos | Japan