Find the best nature & wildlife tours in Japan on Pelago. Plan and book online with the best prices and world class support.

The Best Nature & Wildlife tours in Japan | Updated December 2025

Japan

Explore Kyoto’s top sights—Fushimi Inari, Arashiyama Bamboo Grove, and the Sagano Romantic Train—on a hassle-free day trip from Osaka.

Traverse through a tunnel of blooming cherry blossoms on a scenic railway soaking in the serene beauty of nature while enjoying a day filled with rich Japanese culture and history.

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Experience the unique sight of Japanese macaques soaking in natural hot springs surrounded by serene winter landscapes offering a delightful glimpse into their playful behavior and habitat.

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Experience breathtaking views of humpback whales breaching as you cruise the azure waters of Okinawa capturing unforgettable memories with friends or family during this exclusive winter tour.

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Experience the majesty of humpback whales breaching in Okinawa's clear waters where breathtaking marine encounters create unforgettable memories against a stunning backdrop of nature.

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Breathtaking views of Amanohashidate and Ine Bay await framed by cherry blossoms. Explore the floating fisherman’s village and savor a delicious meal while soaking in the serene landscape.

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Experience the stunning views of Mt. Fuji alongside the striking architecture of traditional pagodas perfect for creating unforgettable memories in Japan's iconic landscapes. Customize your journey for a personal touch.

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Experience the stunning majesty of Mt. Fuji while cruising on the pirate ship at Ashinoko Lake surrounded by lush greenery and breathtaking views. Perfect for adventurers and shoppers alike!

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Experience the majestic silhouette of Mt. Fuji framed by traditional architecture blending history and stunning views. A perfect slice of Japan awaits explorers ready for adventure.

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Experience the stunning winter views from Mt. Gozaisho Ropeway where pristine snow-capped peaks meet breathtaking scenery creating unforgettable memories for every traveler. Enjoy the adventure!

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Explore the serene beauty of Amanohashidate's unique sandbar surrounded by stunning landscapes offering perfect moments for relaxation and photography on your journey through Kyoto and Osaka.

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The Best Nature & Wildlife tours in
Japan

Kyoto Tour: Sagano Train, Bamboo Grove & Fushimi Inari

Day Trip to See the Snow Monkeys from Shinjuku with Lunch Buffet

Asahiyama Zoo, Fascinating Aoi-Ike Light Up in Winter!

Okinawa Whale Watching From Naha

[Winter Only] Kerama Islands Whale Watching Tour from Naha in Okinawa with Round-Trip Transfers & Photos | Japan

Japan・Okinawa｜Kerama Islands Whale Watching｜Chinese and English support from Naha (free city pick-up)｜Japanese support from Chatan

Osaka Day Tour: Amanohashidate & Ine Bay

Private Mount Fuji And Hakone Tour with English Guide

Explore Mt. Fuji Ice Cave in Aokigahara Forest

Departing from Takayama [Regular sightseeing bus] World Heritage Sites Shirakawago and Gokayama Ainokura

Snow View Rafting with Watching Wildlife in Chitose River

Mt. Fuji 5th Station, Owakudani Ropeway, Pirate Ship plus Outlet shopping!

Mt Fuji, Takayama, Nagano Private Tour w Local guide/photographer

Togakushi: A Serene Walk Through Sacred Forests & Soba Traditions

Private Tour to Mt Fuji, Lake Kawaguchi with Limousine and Driver

[Biei/Furano] One-day sightseeing by private car!

Mt. Gozaisho Ropeway,Nabana no Sato for Illumination and Begonia Garden!

Tokyo: Mt.Fuji & Lake Kawaguchiko 1-Day Bus Tour w/Optional Lunch

Osaka Private Charter Tour Miyama & Amanohashidate & Uji Routes

1-Day Winter Tour From Nozawa Onsen: Snow Monkeys, Zenko-ji Temple & Sake