So, you’ve booked your flight, and Japan’s ready and waiting for you. To make your trip even smoother, you’ve decided to hop on trains to get around — and that’s the right choice!
The Whole JR Pass is a super handy and affordable way to travel. When you use it right, you'll save so much time and money. After all, you'll enjoy unlimited rides on Japan Railways (JR) trains, buses, and ferries. It's perfect for exploring the country far and wide.
But perhaps you have no idea what local trains and limited express ones are. Or maybe all those train maps look a bit overwhelming. No worries! We’ve got your back with a 7-day (and 14-day) Japan-by-train itinerary that’s perfect for first-timers.
Here’s the scoop on how to travel Japan entirely by rail, starting from Tokyo:
7-Day Japan Rail Pass Itinerary: Tokyo Round-Trip
Day 1: Tokyo → Kanazawa
Cost without JR Pass: 14,000 yen
Not planning to spend too much time in Tokyo? Perfect — kick off your JR Pass adventure at Tokyo Station and head west to Kanazawa. This gorgeous Edo-era city is known for its samurai history, one of Japan’s most beautiful gardens, and charming old districts that feel like stepping back in time.
Things to Do in Kanazawa:
Kenrokuen Garden – Often considered one of Japan’s top three gardens. You can also join a Kanazawa Highlights Tour, which includes stops at Kanazawa Castle and the Nomura Family Samurai House.
Higashi Chaya District – A beautifully preserved geisha district filled with historic teahouses and traditional architecture.
Day 2: Kanazawa → Kyoto
Cost without JR Pass: 6,500 yen
On your second day, it’s time to head to one of Japan’s most iconic cities. We’re talking about Kyoto – the ancient capital and cultural heart of Japan, packed with serene Zen temples, traditional gardens, and rich history. Hop on the Limited Express train to Kyoto Station, your gateway to the city's top attractions.
Things to Do in Kyoto:
Fushimi Inari Shrine – One of the most famous temples in Kyoto and totally worth the hype. Our tip? Join a “secret” hiking tour to uncover hidden trails and escape the crowds.
Kinkaku-ji (Golden Pavilion) – This unique Zen temple is coated in gold leaf from top to bottom. And it's truly a sight to behold. Instead of just snapping a photo, consider joining a 90-minute guided tour. You'll understand the history behind the place then.
Arashiyama Bamboo Grove – Yes, it’s crowded, but still magical. Beyond the typical Insta-worthy shots, you can join a bamboo LED-making workshop. Either that or hop on a rickshaw through the forest for a unique experience.
Nishiki Market – Known as “Kyoto’s Kitchen,” this bustling market is a must-visit for food lovers. With over 100 stalls offering everything from dried seafood to pickled delights, it’s a feast for the senses. For the best experience, join a walking food tour with a local guide to get insider tips and tasty samples.
Day 3: Kyoto → Osaka
Cost without JR Pass: 500 yen
After exploring the ancient capital of Kyoto, it’s just a short hop over to Osaka with the Tokaido Shinkansen! While you might not have time to squeeze in Universal Studios Japan (USJ), don't worry. Osaka is a food lover’s paradise and has plenty to offer as one of Japan's largest cities.
Things to Do in Osaka:
Street Food Crawl in Dotonbori – With only one day in town, make sure you eat like you mean it at Dotonbori. From takoyaki to okonomiyaki, this place is packed with flavour. You can even join a private pop culture tour that hits spots like Tenjinbashi and Amerikamura.
Umeda Sky Building – Love a good city skyline? Head up this 40-storey skyscraper for sweeping, panoramic views of Osaka. It's a great way to soak in the city from above.
Day 4: Osaka → Himeji → Hiroshima
Cost without JR Pass: 11,500 yen
At this point, your perfect Japan itinerary is really starting to come together. After Osaka, make a detour to Himeji to explore the iconic white castle. It's absolutely stunning during cherry blossom season — before continuing on to Hiroshima.
Things to Do in Himeji/Hiroshima:
Himeji Castle – A gorgeous spot in any season. This UNESCO World Heritage Site is one of Japan’s most impressive castles. Want to add some extra fun? Pair it with a sake brewery tour nearby.
Peace Memorial Park & Miyajima Island – Two must-see spots in Hiroshima. The Peace Park offers a powerful, moving experience. Then take a short trip to Miyajima Island to see Itsukushima Shrine, the iconic floating torii gate — easily one of the most beautiful places in Japan.
Day 5: Hiroshima → Hakata (Fukuoka)
Cost without JR Pass: 8,500 yen
Next stop: Fukuoka! Hop on the shinkansen from Hiroshima Station to Hakata and soak up Fukuoka’s chill vibes and famous tonkotsu ramen. This underrated gem often gets skipped by foreign visitors who stick to the classic Tokyo–Kyoto–Osaka route. But if you're keen on discovering a more local side of Japan, Fukuoka is the place to be.
Things to Do in Hakata:
Ohori Park – A peaceful city escape with a large pond right at its centre. It’s perfect for a stroll, a jog, or even a boat ride. Especially lovely during cherry blossom season or when the leaves turn in autumn.
Fukuoka Tower – Standing 234 metres high, this sleek tower offers stunning 360-degree views of Hakata Bay. Come at night to see the capital of Kyushu at its sparkling best.
Yatai food stalls – You haven’t truly experienced Fukuoka until you’ve eaten at a yatai. These open-air food stalls only pop up after 6pm and keep serving till around 2am – unless the weather’s seriously bad. Expect delicious ramen, yakitori, oden, and good vibes all around. Great for a casual late-night bite and chatting with locals.
Day 6: Hakata → Tokyo (Long Ride!)
Cost without JR Pass: 13,000 yen
Use the JR Pass to its fullest with this bullet train ride back to Tokyo (5+ hours). Consider booking an earlier train so you can enjoy a full evening in the capital city. That way, you'll have time to check out spots like Tokyo Tower (definitely worth getting tickets for) or Ueno Park at night.
Day 7: Rest Day or Tokyo to Sendai Day Trip
Cost without JR Pass: 11,000 yen (to Sendai)
You've already experienced plenty of train travel in Japan. So, no trains needed today if you're ready for a break. We don’t blame you if you want to relax! Spend your last day chilling in Tokyo, with options like the National Science Museum, Tokyo Metropolitan Art Museum or the Tokyo National Museum to explore. If you have time, Ueno Zoo is also worth a visit.
However, if you're itching for one last adventure, the JR train lines are there to serve you. One of the best day trips from Tokyo using the JR Pass is to head up to Sendai. Located in the Tohoku region, Sendai offers a wonderful mix of nature, history, and culture. Explore the majestic Zuihoden Mausoleum, stroll around beautiful Sendai Castle Park, or take in the stunning views of Matsushima Bay — considered one of Japan’s three most scenic spots, making it a great choice for a tour. The city’s famous beef tongue (gyutan) is also a must-try for foodies.
(Optional) To Form a 14-Day Japan Rail Pass Itinerary
One week in Japan is great, but let’s be real — it’s just not enough! If you’re thinking about sticking around for two weeks, this part of the guide will build on the first week. It’s perfect if you want to stretch your adventure and make the most of that JR Pass. Ready to dive into even more of Japan? Let’s go!
Day 8: Tokyo → Nikko
Cost without JR Pass: 6,000 yen for a round trip
After a few busy days in Tokyo, it’s time for a change of pace. All that hustle and bustle can get to you eventually. So, the next logical move? Heading to Nikko, of course. This peaceful retreat is nestled in the mountains and is famous for its stunning natural beauty and UNESCO World Heritage sites. It’s the perfect getaway for some tranquility and a bit of culture.
Things to Do in Nikko:
Toshogu Shrine: A must-see, this ornate shrine is dedicated to Tokugawa Ieyasu, the founder of the Tokugawa shogunate. The intricate carvings and beautiful surrounding forests make this a highlight. Our recommendation? Go birdwatching on a private morning hike (and with a bit of luck, you might even spot flying squirrels!).
Kegon Falls: A spectacular waterfall in the Nikko National Park, it’s especially impressive in autumn when the leaves change colour.
Lake Chuzenji: Located just two minutes away from Kegon Falls, this serene lake (also known as the Sea of Happiness) will take your breath away. With its location at the foot of Mount Nantai, Nikko's sacred volcano, you can enjoy jaw-dropping views. If you have the time, you can even walk around the lake, though it’ll take around 6 hours.
Day 9: Tokyo → Matsumoto
Cost without JR Pass: 6,500 yen
If you're planning a two-week trip to Japan, you’ve got to factor in some time to explore one of Japan’s most iconic castles. Matsumoto is famous for its impressive black-and-white Matsumoto Castle. The city is also surrounded by breathtaking mountains, making it the perfect blend of culture and nature — and well worth the journey.
Things to Do in Matsumoto:
Matsumoto Castle: Originally built during the Sengoku Period in 1467, this historic landmark is also known as the "Crow Castle" due to its dark exterior. It’s one of Japan’s most beautiful and well-preserved castles. Climb to the top for incredible views of the city and the surrounding Alps. Or, if you're up for something extra, combine your visit with a samurai experience for an added historical feel.
Nakamachi Shopping Street: Wander through this charming street lined with traditional merchant houses, now home to shops, cafes, and galleries. If you're looking for unique souvenirs, this is the place to find lacquerware, pottery, and wooden crafts.
Day 10: Matsumoto → Kamikochi (Day Trip)
Cost without JR Pass: 5,000 yen for a round trip
Kamikochi is Japan's version of the Alps, with jaw-dropping mountain views and that fresh, cool air. Whether you’re just popping by for the day or staying overnight, it’s the perfect spot to kick back and enjoy nature.
Things to Do in Kamikochi:
Walk the Kappa Bridge Trail: This trail is super popular, taking you across the iconic Kappa Bridge with stunning views of the mountains and rivers. Definitely worth the walk!
Riverside Hikes: Whether you’re in the mood for a relaxed stroll or a more challenging hike, there are plenty of beautiful trails along the river. You can hike on your own or hire a guide to show you ultra-scenic spots like Taisho Pond or the Hodaka Shrine Okumiya, where travellers pray for safety while climbing the mountains. Whatever you choose, the views are amazing.
Day 11: Matsumoto → Takayama
Cost without JR Pass: 3,500 yen
Next up: Takayama – an Edo-period town that feels like it hit pause on time (in the best way possible). With its traditional wooden houses, peaceful streets, and sake breweries dotted around, it's the perfect spot to slow things down and soak in some old-school charm.
Things to Do in Takayama:
Sanmachi Suji Street: Wander through this lovely historic street, where the buildings look like they’re straight out of a period drama. Some have been turned into museums, cute little shops, and sake breweries – so you can sip, shop, and stroll all in one go.
Hida Folk Village: Just a quick bus ride from the town centre, this open-air museum is full of traditional thatched-roof houses and gives you a glimpse into rural life from back in the day. It’s about 18 minutes from the railway station by bus – or if you’re with older travellers, it might be worth booking a one-day tour for extra convenience.
Day 12: Takayama → Shirakawa-go
Cost without JR Pass: 2,500 yen
From Takayama, jump on a bus and head to Shirakawa-go – a dreamy little village that looks like it came straight out of a storybook. It’s best known for its gassho-zukuri houses, those steep thatched-roof farmhouses that are seriously photogenic. If you're visiting in winter, you're in for a real treat – the whole place turns into a snowy wonderland.
Things to Do in Shirakawa-go:
Shirakawa-go Village: Take your time exploring the village, wandering past these iconic homes. You can pop into the Wada House – one of the largest and best-preserved farmhouses – or take a short hike up to the viewpoint for a stunning shot of the village below. Either way, there are regular sightseeing buses departing from Takayama if you’re not using the JR Pass for any reason.
Day 13: Shirakawa-go → Nagano
Cost without JR Pass: 9,500 yen
Next, it’s off to Nagano – a spot that blends history, nature, and a few surprise guests (hint: they love hot springs). Whether you're into temples or just want to relax, this place has you covered.
Things to Do in Nagano:
Zenko-ji Temple: This is one of Japan’s oldest and most important temples, and it's got a peaceful atmosphere that’s perfect for a quiet morning stroll. The main hall is huge, and there’s a sacred statue inside that people come from all over to see.
Snow Monkey Park (if in season): If you’re here during winter, you’ve got to visit Jigokudani Monkey Park. Seeing the snow monkeys lounging in hot springs is as fun and unique as it sounds – it’s kind of surreal in the best way.
Onsen in Yudanaka: Fancy a soak yourself? Head to Yudanaka Onsen nearby – it’s a classic hot spring town where you can wind down in true Japanese style.
Day 14: Nagano → Tokyo
Cost without JR Pass: 8,000 yen
Time to wrap up your trip and make your way back to Tokyo. Depending on when you arrive, you might still have time for a bit of last-minute exploring, shopping, or one final amazing meal.
Souvenirs: Ginza and Shibuya are both great for picking up a few final souvenirs. Whether it’s quirky gadgets, beautiful crafts, or something stylish, you’re sure to find a little something to remember Japan by.
Sushi: What better way to end your trip than with a proper sushi meal? Head to Tsukiji Market or find a cosy sushi spot around the city – it's the perfect way to toast to an unforgettable two weeks in Japan.
Savings from Your Itinerary for Japan Rail Pass Holders:
Exploring Japan with the JR Pass in One Week
Tokyo → Kanazawa: 14,000 yen
Kanazawa → Kyoto: 6,500 yen
Kyoto → Osaka: 500 yen
Osaka → Himeji → Hiroshima: 11,500 yen
Hiroshima → Fukuoka: 8,500 yen
Fukuoka → Tokyo: 13,000 yen
Tokyo → Sendai → Tokyo: 22,000 yen
Total cost without the pass for 7 days: 76,000 yen With the JR pass: 50,000 yen – worth the money spent!
Exploring Japan with the JR Pass in Two Weeks
Tokyo → Nikko → Tokyo: 6,000 yen
Tokyo → Matsumoto: 6,500 yen
Matsumoto → Kamikochi → Matsumoto: 5,000 yen
Matsumoto → Takayama: 3,500 yen
Takayama → Shirakawago: 2,500 yen
Shirakawago → Nagano: 9,500 yen
Nagano → Tokyo: 8,000 yen
Total cost without the pass for 14 days: 117,000 yen With the pass: 104,000 yen – worth the money spent!
Of course, there are many options for travelling around Japan by train. Where you go will determine whether or not the JR Pass is worth purchasing for your journey.
For instance, if you're only travelling within the Kansai region to Osaka and Kyoto, then a full JR Pass might not be worth buying. A Hokuriku Arch Pass might be a better choice instead. In any case, here’s a handy JR Pass itinerary calculator that you can use to determine the best itinerary for Japan that suits your needs.
Wrapping Up Your JR Pass Itinerary
Train travel in Japan isn’t just efficient — it’s a full-blown experience.
Whether you’re zipping between big cities or wandering through a small town with quaint tea houses, the JR Pass opens up the entire country in the most convenient way possible.
Beyond bullet trains, you can also hop on the Tokyo Skyliner to travel between Narita Airport and the city, or ride a JR ferry to reach beautiful islands like Miyajima — it all depends on your itinerary and where your curiosity leads.
Ultimately, if you’re wondering how to spend 2 weeks in Japan, the best way to travel around the country is, hands down, with a thoughtfully planned JR Pass.
For extra comfort — especially on longer routes — you can ride in style with the cushier, more luxurious Green Car seats instead of the standard ones.
Just remember: to start using your pass, you’ll need to exchange your voucher at a ticket office for the actual pass. Don’t forget to bring your passport, and give yourself a bit of extra time — queues can get long at busy stations.
If you're curious about the best way to buy the JR Pass, we’ve got you covered with a simple step-by-step guide.
And once you’ve got your pass in hand, here’s exactly how to reserve JR Pass seats — whether you want to do it online or in person.
With all that sorted, you’re ready to explore zen gardens, temples, castles, and mountains by rail.
So go on — let the rhythm of the train tracks guide your adventure. Japan’s waiting.